# Installation

## Requirements

UQ-PhysiCell requires Python 3.10 or later and the following dependencies:
- [pcdl](https://github.com/elmbeech/physicelldataloader/tree/master)
- [SALib](https://salib.readthedocs.io/en/latest/index.html)

## Installation from PyPI

We recommend using a virtual environment, such as [venv](https://docs.python.org/3/library/venv.html) or [conda](https://docs.conda.io/projects/conda/en/latest/user-guide/tasks/manage-environments.html).

```bash
pip install uq-physicell
```

## Installation from Source

1. Clone the repository:
   ```bash
   git clone https://github.com/heberlr/UQ_PhysiCell.git
   cd UQ_PhysiCell
   ```

2. Install in development mode:
   ```bash
   pip install -e .
   ```

## Additional Dependencies

For Bayesian optimization features, install the optional dependencies:
```bash
pip install torch botorch gpytorch
```

For Aproximate Bayesian Computation:
```bash
pip install pyabc
```

## Verification

To verify the installation, run:
```python
import uq_physicell
print(f"UQ-PhysiCell version: {uq_physicell.__version__}")
```

You should see the current version number displayed. The latest version is {sub-ref}`version`.