# Publications

Main publications to cite:
- Rocha, Heber L. et al. UQ-PhysiCell: An extensible Python framework for uncertainty quantification and model analysis in PhysiCell. **bioRxiv**, 2026.
[10.64898/2026.04.06.716692](https://doi.org/10.64898/2026.04.06.716692).
- Johnson, Jeanette A.I. et al. Human interpretable grammar encodes multicellular systems biology models to democratize virtual cell laboratories. **Cell**, 2025; 188, 4711-4733.e37. [doi.org/10.1016/j.cell.2025.06.048](https://doi.org/10.1016/j.cell.2025.06.048)

Related publications:
- Ghaffarizadeh, A. et al. PhysiCell: An open source physics-based cell simulator for 3-D multicellular systems. **PLOS Computational Biology**, 2018; 14(2), e1005991. [doi.org/10.1371/journal.pcbi.1005991](https://doi.org/10.1371/journal.pcbi.1005991)
- L. Rocha, H. et al. A multiscale model of immune surveillance in micrometastases gives insights on cancer patient digital twins. **npj Syst Biol Appl**, 2024; 10, 144. [doi.org/10.1038/s41540-024-00472-z](https://doi.org/10.1038/s41540-024-00472-z)