# Examples

This section provides comprehensive examples of using UQ-PhysiCell for uncertainty quantification, sensitivity analysis, parameter sampling, Bayesian optimization (BO), and Approximate Bayesian Computation(ABC). The examples progress from basic model setup to advanced analysis workflows.


<!-- Include the notebook (MyST-NB will render the .ipynb) -->
```{toctree}
:maxdepth: 1

examples/ex1_context_setup
examples/ex2_storage_modes
examples/ex3_runSA_MultiTask
examples/ex4_runSA_MPI
examples/virus-mac-new/ex5_OAT_example
examples/virus-mac-new/ex6_LHS_example
examples/virus-mac-new/ex7_Calib_BO
examples/virus-mac-new/ex8_ABC_Calib
examples/template/ex9_Calib_BO
examples/epi_caf_invasion/ex10_CoCulture
```