Publications

Main publications to cite:

• Rocha, Heber L. et al. UQ-PhysiCell: An extensible Python framework for uncertainty quantification and model analysis in PhysiCell. bioRxiv, 2026. 10.64898/2026.04.06.716692.

• Johnson, Jeanette A.I. et al. Human interpretable grammar encodes multicellular systems biology models to democratize virtual cell laboratories. Cell, 2025; 188, 4711-4733.e37. doi.org/10.1016/j.cell.2025.06.048

Related publications:

• Ghaffarizadeh, A. et al. PhysiCell: An open source physics-based cell simulator for 3-D multicellular systems. PLOS Computational Biology, 2018; 14(2), e1005991. doi.org/10.1371/journal.pcbi.1005991

• L. Rocha, H. et al. A multiscale model of immune surveillance in micrometastases gives insights on cancer patient digital twins. npj Syst Biol Appl, 2024; 10, 144. doi.org/10.1038/s41540-024-00472-z